PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24687_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 83aa    MW: 9290.33 Da    PI: 4.7472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24687_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.5e-134974227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG+C yG+rC+F+H++
  Neem_24687_f_1 49 DEADCIHYLRTGFCGYGSRCRFNHPR 74
                    6899********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-44774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2864775IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-104974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-75075IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-65374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MERYGRVSGG SQSDPSLEWT APGTETGLEE PMWQLGLGAG VESYPERPDE ADCIHYLRTG  60
FCGYGSRCRF NHPRDRGMMS IVF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518533.13e-39PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ9SQU42e-32C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV7BPI62e-38V7BPI6_PHAVU; Uncharacterized protein
STRINGGLYMA15G10230.19e-35(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2579233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.19e-34C3H family protein